MANTIS: setup and rules

MANTIS setup

branch: https://git-r3lab.uni.lu/IMP/imp3/-/tree/mantis

• git submodule
• conda env.
• check installation
• add rules, config param.s etc.
• test run (incl. binning)
• update the mantis branch
• switch from GitLab repo to GitHub repo
• update the code (see issue #22 (closed))
• databases download/setup (see issue #22 (closed))
• replace gut submodule by conda installation (i.e. env. YAML file)
• replace HMM search w/ essential HMM by mantis annotation (list of genes in Mantis) --> updated version: 1.3
  • pending: an update of binny might make this task obsolete