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This is a read-only mirror of the GitHub R package repository.

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

A new shiny interface to generate transformation products (TPs) from parent compounds (pesticides, pharmaceuticals, etc.).

Scripts for the analysis of metagenomic data from the first week of life.

PINK1 shows LRRK2, Parkin, and SNCA as part of the Parkinson’s network.

Repository for all slides related to R3 courses.

Analysis workflows for the Leptospirillum ferriphilum omics data

from https://gitlab.com/ecohealthalliance/drake-gitlab-docker-example

Repository for all slides related to R3 courses.

This repository contains the code for statistical analyses performed in Chapter 3 of my thesis "Cross-sectional and longitudinal profiling of PD transcriptomics and metabolomics". The project consists on whole blood transcriptomics and blood plasma metabolomics cross-sectional and longitudinal profiling of Parkinson's disease patients and controls from the PPMI cohort and the LuxPARK cohort respectively, to identify differential molecular and higher-level functional features in PD.

Method testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs Data obtained by sequencing "generous donor B" across several runs Original data prepared by Rashi (post-sequencing) Initial analyses performed by CCL