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Repository for all slides related to R3 courses.

Basic practice repository for git trainings

Repository for all slides related to R3 courses.

This project hosts the JSON schemas used for representing the metadata of submissions to the ELIXIR translational data repository. It also provides validation utility methods.

Basic practice repository for git trainings

Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).

Graph representation learning modelling pipeline exploiting molecular interaction networks of transcriptomics (protein-protein interactions) and metabolomics (metabolite-metabolite interactions) to learn PD-specific fingerprints from the spatial distribution of molecular relationships in an end-to-end fashion. The scripts apply the graph representation learning modelling pipeline on networks of molecular interactions, where transcriptomics and metabolomics data from the PPMI and the LuxPARK cohort, respectively, are projected.

Basic practice repository for git trainings

Want to learn how to use snakemake? Here are some example to demonstrate the main components and some advanced functionalities.

Basic practice repository for git trainings

Repository containing the workflow to analyse the RNAseq data as well as auxiliary scripts and tables e.g. for summarizing sample counts.

This repository contains a class that aims to parse CSV file, then generate a PDF file with some plotting

Anna Chen: Black Box Optimization

Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life

Basic practice repository for git trainings