Explore projects

An automated workflow for constructing maps of molecular mechanisms for given diseases. It streamlines querying gene-disease and variant-disease associations, calculating enrichment of disease maps and pathways, and combining enriched diagrams with text mining data into a single map, meant for the MINERVA Platform.

xBEL to Cell Designer convertor

Basic practice repository for git trainings

https://r3.pages.uni.lu/howto-cards

Want to learn how to use snakemake? Here are some example to demonstrate the main components and some advanced functionalities.

A project for interactions with PubChem

Basic practice repository for git trainings

Repository for all slides related to R3 courses.

Basic practice repository for git trainings

Graph representation learning modelling pipeline exploiting sample-similarity networks derived from high-throughput omics profiles to learn PD-specific fingerprints from the spatial distribution of molecular abundance similarities in an end-to-end fashion. The scripts apply the graph representation learning modelling pipeline on sample-similarity networks of transcriptomics and metabolomics data from the PPMI and the LuxPARK cohort, respectively.