Explore projects

This repository contains the code for statistical analyses performed in Chapter 3 of my thesis "Cross-sectional and longitudinal profiling of PD transcriptomics and metabolomics". The project consists on whole blood transcriptomics and blood plasma metabolomics cross-sectional and longitudinal profiling of Parkinson's disease patients and controls from the PPMI cohort and the LuxPARK cohort respectively, to identify differential molecular and higher-level functional features in PD.

Basic practice repository for git trainings. Carmen's fork.

Basic practice repository for git trainings

Basic practice repository for git trainings

Basic practice repository for git trainings

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

Gene regulation inference of COVID-19

Theme for presentations.

All scripts used for AMR and MGE analysis of the LAO dataset

Benchmark data and code for UniFuncNet manuscript

This project hosts the JSON schemas used for representing the metadata of submissions to the ELIXIR translational data repository. It also provides validation utility methods.

This project includes the generator scripts for generating the index files of the howto-cards and modules (handbook, qms, ...)

This repository contains the code for ML analyses performed in Chapter 4 of my PhD thesis "Interpretable Machine Learning on omics data for biomarker discovery in Parkinson's disease". The project consists on performing Parkinson's disease (PD) case-control classification from blood plasma metabolomics measurements at the baseline clinical visit from the LuxPARK cohort, and from whole blood transcriptomics data at baseline as well as dynamic features engineered from a short temporal series of 4 timepoints from the PPMI cohort. The study involves evaluation of different feature selection strategies, The goal was to build and test a collection of ML models and, most interestingly, identify molecular and higher-level functional representations associated with PD diagnosis.