Explore projects

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

The COVIDminer text mining project (https://rupertoverall.net/covidminer/) reads the published literature concerning SARS-CoV-2 and COVID-19 to extract statements about (primarily molecular) interactions. Using the API associated with this project, p

Issue tracker of HeBA-GeSA-RBD project

Simple Git repository to demonstrate main features of Gitlab during the LCSB Core Tools training

Basic practice repository for git trainings

A Jekyll theme for the ELIXIR website

Practice repository R3 git training. Slides: https://r3school.pages.uni.lu/git.slides

Utilities that work with GNPS records.

xBEL to Cell Designer convertor

Mirror of https://github.com/arq5x/bedtools2.git -16/07/2015-

An automated workflow for constructing maps of molecular mechanisms for given diseases. It streamlines querying gene-disease and variant-disease associations, calculating enrichment of disease maps and pathways, and combining enriched diagrams with text mining data into a single map, meant for the MINERVA Platform.

Externally visible Howto Cards (preview at https://lcsb.pages.uni.lu/howto/external )

Treating compound mixes

Docker image to serve as the basis for local plugin tests development