Explore projects

Exploration plugin for Minerva

Simple Git repository to demonstrate main features of Gitlab during the LCSB Core Tools training

Gene Set Enrichment Analysis

Graph representation learning modelling pipeline exploiting sample-similarity networks derived from high-throughput omics profiles to learn PD-specific fingerprints from the spatial distribution of molecular abundance similarities in an end-to-end fashion. The scripts apply the graph representation learning modelling pipeline on sample-similarity networks of transcriptomics and metabolomics data from the PPMI and the LuxPARK cohort, respectively.

Example Minerva plugin showing how plugins can interact with Minerva

R code for an interface to MINERVA API and helper functions

A repository to store code used in various projects for data cleanup, integration or analysis.

STAR and DESeq2