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CBG / RNetDys
GNU General Public License v2.0 or laterThis is a mirror from https://github.com/BarlierC/RNetDys.
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ESB / ensemble_spieceasi
GNU General Public License v3.0 onlyNetwork Analyses - SpiecEasi The Rscripts and Snakefile herein can be used to run SpiecEasi for generating networks from taxonomic counts Dependencies snakemake >= 5.3.0 References (SpiecEasi)[https://github.com/zdk123/SpiecEasi]Updated -
ESB / archaea_in_gut
MIT LicenseUpdated -
DVB / Modamio_2021
Apache License 2.0Updated -
DVB / Sabate-Soler_2022
Apache License 2.0Updated -
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ICS-lcsb / MIC-MAC 2
Apache License 2.0Updated -
BDS / GeneDER / ArrayUtils
MIT LicenseThis R package contains functions that can be useful to analyse microarray data.
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Code used for the analysis of the RNA-seq, ATAC-seq and ChIP-seq datasets produced in this study. Original fastq files deposited in https://ega-archive.org/, under the accession number EGAD00001009288.
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An exploration on gene expression data was carried out on single-cell RNAseq analyses of bronchoalveolar lavages from nine COVID-19 patients, three moderate cases, severe case and critical cases, comparing with healthy subjects.
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