From 652511ebdd2e4e598aeabfd6f8dbc7b02a9a227f Mon Sep 17 00:00:00 2001
From: Piotr Gawron <p.gawron@atcomp.pl>
Date: Tue, 8 Apr 2025 14:36:57 +0200
Subject: [PATCH] revert changes
---
.../mapviewer/model/map/reaction/ReactionNode.java | 7 -------
.../mapviewer/services/impl/ReactionService.java | 4 ----
.../test/java/lcsb/mapviewer/web/api/NewApiDocs.java | 12 ------------
3 files changed, 23 deletions(-)
diff --git a/model/src/main/java/lcsb/mapviewer/model/map/reaction/ReactionNode.java b/model/src/main/java/lcsb/mapviewer/model/map/reaction/ReactionNode.java
index 32ba19199..18ad6b08a 100644
--- a/model/src/main/java/lcsb/mapviewer/model/map/reaction/ReactionNode.java
+++ b/model/src/main/java/lcsb/mapviewer/model/map/reaction/ReactionNode.java
@@ -76,13 +76,6 @@ public abstract class ReactionNode extends AbstractNode {
return element;
}
- public String getElementId() {
- if (element != null) {
- return element.getElementId();
- }
- return null;
- }
-
/**
* @param element the element to set
* @see #element
diff --git a/service/src/main/java/lcsb/mapviewer/services/impl/ReactionService.java b/service/src/main/java/lcsb/mapviewer/services/impl/ReactionService.java
index 1d312720e..3c89c3b15 100644
--- a/service/src/main/java/lcsb/mapviewer/services/impl/ReactionService.java
+++ b/service/src/main/java/lcsb/mapviewer/services/impl/ReactionService.java
@@ -3,7 +3,6 @@ package lcsb.mapviewer.services.impl;
import lcsb.mapviewer.model.map.MiriamType;
import lcsb.mapviewer.model.map.model.ModelData;
import lcsb.mapviewer.model.map.reaction.Reaction;
-import lcsb.mapviewer.model.map.reaction.ReactionNode;
import lcsb.mapviewer.persist.dao.map.ReactionDao;
import lcsb.mapviewer.persist.dao.map.ReactionProperty;
import lcsb.mapviewer.services.ObjectNotFoundException;
@@ -87,9 +86,6 @@ public class ReactionService implements IReactionService {
if (initializeLazy) {
for (final Reaction reaction : result) {
Hibernate.initialize(reaction.getModelData());
- for (ReactionNode node : reaction.getReactionNodes()) {
- Hibernate.initialize(node.getElement());
- }
}
}
return result;
diff --git a/web/src/test/java/lcsb/mapviewer/web/api/NewApiDocs.java b/web/src/test/java/lcsb/mapviewer/web/api/NewApiDocs.java
index e07f84d8f..a0d15eec7 100644
--- a/web/src/test/java/lcsb/mapviewer/web/api/NewApiDocs.java
+++ b/web/src/test/java/lcsb/mapviewer/web/api/NewApiDocs.java
@@ -991,10 +991,6 @@ public class NewApiDocs {
.description("identifier of the element for this product")
.type(JsonFieldType.NUMBER)
.optional(),
- fieldWithPath(prefix + "products[].elementId")
- .description("element identifier of the element for this product")
- .type(JsonFieldType.STRING)
- .optional(),
fieldWithPath(prefix + "products[].stoichiometry")
.description("SBML stoichiometry")
.type(JsonFieldType.NUMBER)
@@ -1016,10 +1012,6 @@ public class NewApiDocs {
.description("identifier of the element for this reactant")
.type(JsonFieldType.NUMBER)
.optional(),
- fieldWithPath(prefix + "reactants[].elementId")
- .description("element identifier of the element for this reactant")
- .type(JsonFieldType.STRING)
- .optional(),
fieldWithPath(prefix + "reactants[].stoichiometry")
.description("SBML stoichiometry")
.type(JsonFieldType.NUMBER)
@@ -1041,10 +1033,6 @@ public class NewApiDocs {
.description("identifier of the element for this modifier")
.type(JsonFieldType.NUMBER)
.optional(),
- fieldWithPath(prefix + "modifiers[].elementId")
- .description("element identifier of the element for this modifier")
- .type(JsonFieldType.STRING)
- .optional(),
fieldWithPath(prefix + "modifiers[].stoichiometry")
.description("SBML stoichiometry")
.type(JsonFieldType.NUMBER)
--
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