Merge branch 'develop' into 'master'. (d767e271) · Commits · BDS / GeneDER / ArrayUtils · GitLab

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d767e271

Commit d767e271 authored 3 years ago by Leon-Charles Tranchevent

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Merge branch 'develop' into 'master'.

parents 6df04fcd 60786b39

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DESCRIPTION 4 additions, 2 deletions

DESCRIPTION
LICENSE 17 additions, 21 deletions

LICENSE
NAMESPACE 2 additions, 0 deletions

NAMESPACE
R/create_design.R 319 additions, 0 deletions

R/create_design.R
R/extract_DEGs.R 3 additions, 2 deletions

R/extract_DEGs.R
R/get_gene_annots_from_file.R 6 additions, 6 deletions

R/get_gene_annots_from_file.R
R/load_clinical_data.R 15 additions, 5 deletions

R/load_clinical_data.R
R/preprocess_data.R 19 additions, 8 deletions

R/preprocess_data.R
R/preprocess_data_illumina_beadarray.R 1 addition, 1 deletion

R/preprocess_data_illumina_beadarray.R
R/preprocess_data_rnaseq.R 143 additions, 0 deletions

R/preprocess_data_rnaseq.R
R/read_probe_lists.R 2 additions, 2 deletions

R/read_probe_lists.R
R/run_limma.R 28 additions, 134 deletions

R/run_limma.R
R/run_massir.R 2 additions, 2 deletions

R/run_massir.R
R/run_quality_control_on_preprocessed.R 6 additions, 5 deletions

R/run_quality_control_on_preprocessed.R
R/run_quality_control_on_raw.R 8 additions, 4 deletions

R/run_quality_control_on_raw.R
R/run_quality_control_on_raw_affymetrix.R 13 additions, 4 deletions

R/run_quality_control_on_raw_affymetrix.R
R/run_quality_control_on_raw_agilent.R 3 additions, 3 deletions

R/run_quality_control_on_raw_agilent.R
README.md 20 additions, 0 deletions

README.md

with 611 additions and 199 deletions

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