GPML wikipathways remarks
I checked models from wikipathways.
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Colours of pathways are not preserved.
https://www.wikipathways.org/index.php/Pathway:WP4577
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP4577_107175 -
Reversed arrows are displayed as "one direction" arrow.
https://www.wikipathways.org/index.php/Pathway:WP2806 reaction idd62d2e40
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP2806_107137&x=2330&y=1489&zoom=6&search=reaction:%20idd62d2e40& -
Colour of reaction is not preserved in case output reaction.
https://www.wikipathways.org/index.php/Pathway:WP561 reaction d64e8
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP561_107186--gpml&search=reaction:%20d64e8&x=274&y=212& -
Colours of borders of species is not preserved (the font's colour is preserved).
https://www.wikipathways.org/index.php/Pathway:WP254 element MIR29A
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP254_106302-01&x=1171&y=276&search=MIR29A& -
Colour of complex is not preserved. MINERVA displays it light blue, originally gray colour.
https://www.wikipathways.org/index.php/Pathway:WP254 element complex (afd71) IGF1 & IGF2
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP254_106302-01&x=1251&y=157&search=afd71& -
Name of complex might be hidden by its elements, when the name is not at the bottom of complex. MINERVA displays name at the bottom.
https://www.wikipathways.org/index.php/Pathway:WP254 element interferon regulatory factors
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP254_106302-01&x=1100&y=534&search=interferon%20regulatory%20factors& -
The gpml label "ShapeType" is displayed in MINERVA sometimes.
https://www.wikipathways.org/index.php/Pathway:WP254 element mitochondrion
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP254_106302-01&search=Mitochondria:null&x=627&y=475& -
Z-Index is not set correctly.
https://www.wikipathways.org/index.php/Pathway:WP2059 element Endoplasmic reticulum
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP2059_108233&x=882&y=789&zoom=5&search=ef36f& -
Canvas are not displayed fully, left side of map is trimmed.
https://www.wikipathways.org/index.php/Pathway:WP4523
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP4523_108086&x=142&y=790&zoom=5&search=Corticosterone%20methyl%20& -
Some modification sites are not displayed.
https://www.wikipathways.org/index.php/Pathway:WP673 element MDM2
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP673_108769&x=864&y=956&zoom=5&search=MDM2& -
GMPL tag "Comments" is sometimes displayed as per Name ("Pathway: 1") and sometimes as per description ("Pathway: 2").
https://www.wikipathways.org/index.php/Pathway:WP4549
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP4549_108088&x=457&y=1608&zoom=7&search=1Hypothesis& -
hex code in Label TextLabel="Pancreatic
Cancer"split the label/pathway name. In wikipathwyas name is 'Pancreatic Cancer' while in MINERVA it is 'Pancreatic' and 'Cancer' is in description.
https://www.wikipathways.org/index.php/Pathway:WP673 label Pancreatic Cancer.
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP673_108769&search=pan&x=1493&y=75&zoom=5&. -
Rectangle and oval compartments that don't have a textLable in wikipathways, got a name 'PLC-gamma' in MINERVA. https://www.wikipathways.org/index.php/Pathway:WP673
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP673_108769 -
Element is displayed as pathway (while it should be unknown the same way as the other elements).
https://pg-sandbox.uni.lu/minerva/index.xhtml?id=WP4523_108086&x=560&y=235&zoom=5&search=Cholesterol& element 'Cholesterol side-chain cleavage deficiency'.
https://www.wikipathways.org/index.php/Pathway:WP4523#nogo2