Export as GPML remarks
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Colours of pathways/compartments and their fonts are not preserved.
Names of uncovered pathways/compartments are displayed in the top left corner of canvas instead of the rectangular's inside.
CellD: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=Metabolism
GPML: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=modelGPML-01 -
After exporting complex (regular/hypothetical) to GPML, any complex is drawn with dashed line.
CellD: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=Metabolism&x=4731&y=959&zoom=8&search=complex%20IV&
GPML: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=modelGPML-01&x=4731&y=953&zoom=8&search=csa42&
But, empty complex is not light blue colour and not dashed line. It's name is also preserved (see below 3.).
GPML: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=modelGPML-01&x=7071&y=2317&zoom=8&search=AMPK& -
Complexes names are changed after export (complex IV -> csa42) and its name is hidden.
CellD: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=Metabolism&x=4731&y=959&zoom=8&search=complex%20IV&
GPML: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=modelGPML-01&x=4731&y=953&zoom=8&search=csa42& -
Known transition omitted and unknown transition are drawn as state transition. -
All reduced notation reactions are drawn as state transition reactions. -
Reversed reactions are not drawn. -
Colours of reactions are not preserved. -
Arrows are not drawn correctly in reactions protein - RNA. -
Elements modification sites are not preserved. -
Activated element - the dashed rectangle is not drawn.
CellD: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=unknown-rections-check
GPML: https://pg-sandbox.uni.lu/minerva/index.xhtml?id=unknown-rections-check-model