upload of sbml

SBML has an extension for layout description, and it would be good to have SBML upload capability. Also, species’ and reactions’ quantities should be parsed upon upload, and represented visually.

Some comments from Nicolas Le Novere:

I believe SBML Layout is now supported by both SBML APIs:

LibSBML (in C++, but with bindings to Java) http://sbml.org/Software/libSBML

JSBML (native Java) http://sbml.org/Software/JSBML

Re: parsing, with the APIs above, you have access of the whole content of SBML files. You can thereafter use the elements or not. My main advice would be to support SBML as the core language, using the community APIs augmented by the layer processing the CellDesigner annotations.

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More information about the SBML Layout package can be found at: http://sbml.org/Documents/Specifications/SBML_Level_3/Packages/layout

related issue: #232